Index

A

AraTha_2epoch (class in workflow.scripts.ts_simulators)

B

BaseProcessor (class in workflow.scripts.ts_processors), [1]

BaseSimulator (class in workflow.scripts.ts_simulators)

C

cnn_extract (class in workflow.scripts.ts_processors), [1]

D

default_config (workflow.scripts.ts_processors.cnn_extract attribute), [1] (workflow.scripts.ts_processors.genotypes_and_distances attribute), [1] (workflow.scripts.ts_processors.ReLERNN_processor attribute), [1] (workflow.scripts.ts_processors.SPIDNA_processor attribute), [1] (workflow.scripts.ts_processors.tskit_sfs attribute), [1] (workflow.scripts.ts_processors.tskit_windowed_sfs_plus_ld attribute), [1] (workflow.scripts.ts_simulators.AraTha_2epoch attribute) (workflow.scripts.ts_simulators.DependentVariablePopulationSize attribute) (workflow.scripts.ts_simulators.DroMel_CO_FR attribute) (workflow.scripts.ts_simulators.recombination_rate attribute) (workflow.scripts.ts_simulators.VariablePopulationSize attribute) (workflow.scripts.ts_simulators.YRI_CEU attribute)

DependentVariablePopulationSize (class in workflow.scripts.ts_simulators) DroMel_CO_FR (class in workflow.scripts.ts_simulators)

E

embedding() (workflow.scripts.embedding_networks.SPIDNA_embedding_network method) (workflow.scripts.embedding_networks.SummaryStatisticsEmbedding method)

ExchangeableCNN (class in workflow.scripts.embedding_networks)

F

forward() (workflow.scripts.embedding_networks.ExchangeableCNN method) (workflow.scripts.embedding_networks.ReLERNN method) (workflow.scripts.embedding_networks.RNN method) (workflow.scripts.embedding_networks.SPIDNA_embedding_network method) (workflow.scripts.embedding_networks.SPIDNABlock method) (workflow.scripts.embedding_networks.SummaryStatisticsEmbedding method) (workflow.scripts.embedding_networks.SymmetricLayer method)

G

genotypes_and_distances (class in workflow.scripts.ts_processors), [1]

M

model (workflow.scripts.ts_simulators.AraTha_2epoch attribute)

R

recombination_rate (class in workflow.scripts.ts_simulators) ReLERNN (class in workflow.scripts.embedding_networks)

ReLERNN_processor (class in workflow.scripts.ts_processors), [1] RNN (class in workflow.scripts.embedding_networks)

S

species (workflow.scripts.ts_simulators.AraTha_2epoch attribute) SPIDNA_embedding_network (class in workflow.scripts.embedding_networks) SPIDNA_processor (class in workflow.scripts.ts_processors), [1]

SPIDNABlock (class in workflow.scripts.embedding_networks) SummaryStatisticsEmbedding (class in workflow.scripts.embedding_networks) SymmetricLayer (class in workflow.scripts.embedding_networks)

T

tskit_sfs (class in workflow.scripts.ts_processors), [1]

tskit_windowed_sfs_plus_ld (class in workflow.scripts.ts_processors), [1]

V

VariablePopulationSize (class in workflow.scripts.ts_simulators)

Y

YRI_CEU (class in workflow.scripts.ts_simulators)